|
|
Efficient peptide-MHC-I binding prediction for alleles with few known binders.
Laurent Jacob
,
Jean-Philippe Vert
Journal articles
hal-00433574v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Graph kernels for molecular structure-activity relationship analysis with support vector machines.
Pierre Mahé
,
Nobuhisa Ueda
,
Tatsuya Akutsu
,
Jean-Luc Perret
,
Jean-Philippe Vert
et al.
Journal articles
hal-00433584v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
A structural alignment kernel for protein structures.
Jian Qiu
,
Martial Hue
,
Asa Ben-Hur
,
Jean-Philippe Vert
,
William Stafford Noble
et al.
Journal articles
hal-00433578v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)
Nicolas Levy
,
Aurélien Naldi
,
Céline Hernandez
,
Gautier Stoll
,
Denis Thieffry
et al.
Journal articles
hal-01809081v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
The pharmacophore kernel for virtual screening with support vector machines.
Pierre Mahé
,
Liva Ralaivola
,
Véronique Stoven
,
Jean-Philippe Vert
Journal articles
hal-00433580v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop
Anna Niarakis
,
Martin Kuiper
,
Marek Ostaszewski
,
Rahuman Malik Sheriff
,
Cristina Casals-Casas
et al.
Journal articles
hal-02549796v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision
Stéphanie Chevalier
,
Vincent Noël
,
Laurence Calzone
,
Andrei Zinovyev
,
Loïc Paulevé
et al.
Conference papers
hal-02898849v2
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Extracting active pathways from gene expression data.
Jean-Philippe Vert
,
Minoru Kanehisa
Bioinformatics, 2003, 19 Suppl 2, pp.ii238-44
Journal articles
hal-00433588v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Protein homology detection using string alignment kernels.
Hiroto Saigo
,
Jean-Philippe Vert
,
Nobuhisa Ueda
,
Tatsuya Akutsu
Journal articles
hal-00433587v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Where Do We Stand in Regularization for Life Science Studies?
Veronica Tozzo
,
Chloé-Agathe Azencott
,
Samuele Fiorini
,
Emanuele Fava
,
Andrea Trucco
et al.
Journal articles
hal-03367708v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
A systematic analysis of gene-gene interaction in multiple sclerosis
Lotfi Slim
,
Clément Chatelain
,
Hélène de Foucauld
,
Chloé-Agathe Azencott
Journal articles
hal-03122122v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Nonlinear post-selection inference for genome-wide association studies
Lotfi Slim
,
Clément Chatelain
,
Chloé-Agathe Azencott
Conference papers
hal-03122125v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm.
Gautier Stoll
,
Eric Viara
,
Emmanuel Barillot
,
Laurence Calzone
Journal articles
inserm-00762304v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Études d'association génome entier guidées par des réseaux
Héctor Climente González
Bio-informatique [q-bio.QM]. Université Paris sciences et lettres, 2020. Français. ⟨NNT : 2020UPSLM001⟩
Theses
tel-03270879v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Machine learning approaches for drug virtual screening
Benoit Playe
Bioinformatics [q-bio.QM]. Université Paris sciences et lettres, 2019. English. ⟨NNT : 2019PSLEM010⟩
Theses
tel-02186833v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Increasing stability and interpretability of gene expression signatures
Anne-Claire Haury
,
Laurent Jacob
,
Jean-Philippe Vert
2010
Preprints, Working Papers, ...
hal-00448395v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples.
Fantine Mordelet
,
Jean-Philippe Vert
Journal articles
inserm-00641298v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Virtual screening with support vector machines and structure kernels.
Pierre Mahé
,
Jean-Philippe Vert
Combinatorial Chemistry and High Throughput Screening, 2009, 12 (4), pp.409-23
Journal articles
hal-00166188v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Predicting drug side-effect profiles: a chemical fragment-based approach.
Edouard Pauwels
,
Véronique Stoven
,
Yoshihiro Yamanishi
Journal articles
inserm-00663945v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
EMA - A R package for Easy Microarray data analysis.
Nicolas Servant
,
Eleonore Gravier
,
Pierre Gestraud
,
Cecile Laurent
,
Caroline Paccard
et al.
Journal articles
inserm-00984710v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
The Weighted Kendall and High-order Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.2314--2322
Conference papers
hal-01717385v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation
Thomas Bonte
,
Maxence Philbert
,
Emeline Coleno
,
Edouard Bertrand
,
Arthur Imbert
et al.
ECCV 2022 proceedings (Bio-image computing workshop), 2023
Proceedings
hal-03935104v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Mathematical modelling of cell-fate decision in response to death receptor engagement.
Laurence Calzone
,
Laurent Tournier
,
Simon Fourquet
,
Denis Thieffry
,
Boris Zhivotovsky
et al.
Journal articles
inserm-00704979v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
martini: an R package for genome-wide association studies using SNP networks
Chloé-Agathe Azencott
,
Héctor Climente-González
2021
Preprints, Working Papers, ...
hal-03122108v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods
Abdelkader Behdenna
,
Julien Haziza
,
Chloé-Agathe Azencott
,
Akpéli Nordor
2020
Preprints, Working Papers, ...
hal-03114226v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Novel Methods for Epistasis Detection in Genome-Wide Association Studies
Lotfi Slim
,
Clement Chatelain
,
Jean-Philippe Vert
,
Chloé-Agathe Azencott
Journal articles
hal-01984919v2
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Biological networks and GWAS: comparing and combining network methods to understand the genetics of familial breast cancer susceptibility in the GENESIS study
Héctor Climente-González
,
Christine Lonjou
,
Fabienne Lesueur
,
Dominique Stoppa-Lyonnet
,
Nadine Andrieu
et al.
Journal articles
hal-03114234v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Meta-Analysis of Esophageal Cancer Transcriptomes Using Independent Component Analysis
Ainur Seisenova
,
Asset Daniyarov
,
Askhat Molkenov
,
Aigul Sharip
,
Andrei Zinovyev
et al.
Journal articles
hal-03447487v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Waterpixels: Superpixels based on the watershed transformation
Vaïa Machairas
,
Etienne Decencière
,
Thomas Walter
Conference papers
hal-01139797v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|
|
|
Les applications industrielles de la bio-informatique
Jean-Philippe Vert
Réalités industrielles. Annales des mines, 2013, Février 2013, pp.17-23
Journal articles
hal-00796732v1
|
Share
Gmail
Facebook
Twitter
LinkedIn
More
|