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A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction.

Brice Hoffmann , Mikhail Zaslavskiy , Jean-Philippe Vert , Véronique Stoven
BMC Bioinformatics, 2010, 11 (1), pp.99. ⟨10.1186/1471-2105-11-99⟩
Journal articles inserm-00663528v1
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Metric learning pairwise kernel for graph inference

Jean-Philippe Vert , Jian Qiu , William Noble
Preprints, Working Papers, ... hal-00108477v1
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Vector quantization and clustering in presence of censoring

Svetlana Gribkova
Preprints, Working Papers, ... hal-01075676v1
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Variation in breast cancer risk associated with factors related to pregnancies according to truncating mutation location, in the French National BRCA1/2 carrier cohort (GENEPSO).

Julie Lecarpentier , Catherine Noguès , Emmanuelle Mouret-Fourme , Marion Gauthier-Villars , Christine Lasset et al.
Breast Cancer Research, 2012, 14 (4), pp.R99. ⟨10.1186/bcr3218⟩
Journal articles inserm-00724092v1
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A new scoring system in cancer genetics: application to criteria for BRCA1 and BRCA2 mutation screening.

Bernard Bonaïti , Flora Alarcon , Nadine Andrieu , Valérie Bonadona , Marie-Gabrielle Dondon et al.
Journal of Medical Genetics, 2013, 51 (2), epub ahead of print. ⟨10.1136/jmedgenet-2013-101674⟩
Journal articles hal-00923931v1
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Classification of arrayCGH data using fused SVM.

Franck Rapaport , Emmanuel Barillot , Jean-Philippe Vert
Bioinformatics, 2008, 24 (13), pp.i375-82. ⟨10.1093/bioinformatics/btn188⟩
Journal articles inserm-00293893v1
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Tight convex relaxations for sparse matrix factorization

Emile Richard , Guillaume Obozinski , Jean-Philippe Vert
Preprints, Working Papers, ... hal-01025959v3
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SVDetect: a tool to identify genomic structural variations from paired-end and mate-pair sequencing data

Bruno Zeitouni , Valentina Boeva , Isabelle Janoueix-Lerosey , Sophie Loeillet , Patricia Legoix-Né et al.
Bioinformatics Application note, 2010, 26 (15), pp.1895-1896. ⟨10.1093/bioinformatics/btq293⟩
Journal articles inserm-00508372v1
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ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples

Fantine Mordelet , Jean-Philippe Vert
Preprints, Working Papers, ... hal-00594774v1
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In Silico screening on the three-dimensional model of the Plasmodium vivax SUB1 protease leads to the validation of a novel anti-parasite compound.

Anthony Bouillon , David Giganti , Christophe Benedet , Olivier Gorgette , Stéphane Pêtres et al.
Journal of Biological Chemistry, 2013, 288, pp.18561-73. ⟨10.1074/jbc.M113.456764⟩
Journal articles pasteur-01457905v1
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Toxicity assays in nanodrops combining bioassay and morphometric endpoints.

Frédéric Lemaire , Céline A Mandon , Julien Reboud , Alexandre Papine , Jesus Angulo et al.
PLoS ONE, 2007, 2 (1), pp.e163. ⟨10.1371/journal.pone.0000163⟩
Journal articles hal-00193387v1
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Spectral analysis of gene expression profiles using gene networks

Franck Rapaport , Andrei Zinovyev , Marie Dutreix , Emmanuel Barillot , Jean-Philippe Vert et al.
Preprints, Working Papers, ... hal-00021785v1
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Applications of machine learning in computational biology

Edouard Pauwels
Agricultural sciences. Ecole Nationale Supérieure des Mines de Paris, 2013. English. ⟨NNT : 2013ENMP0052⟩
Theses pastel-00958432v1
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Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

Maia Chanrion , Inna Kuperstein , Cédric Barrière , Fatima El Marjou , David Cohen et al.
Nature Communications, 2014, 5, pp.5005. ⟨10.1038/ncomms6005⟩
Journal articles hal-01712223v1
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Multiresolution Kernels

Marco Cuturi , Kenji Fukumizu
Preprints, Working Papers, ... hal-00007489v2
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Near neighbor search in nonmetric space

Joannès Vermorel
Preprints, Working Papers, ... hal-00004887v2
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Power estimation of tests in log-linear non-uniform association models for ordinal agreement.

Fabien Valet , Jean-Yves Mary
BMC Medical Research Methodology, 2011, 11 (1), pp.70. ⟨10.1186/1471-2288-11-70⟩
Journal articles inserm-00601757v1
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The optimal assignment kernel is not positive definite

Jean-Philippe Vert
Preprints, Working Papers, ... hal-00218278v1
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Progress and open challenges in extremely high-dimensional medical outcome prediction

Kevin Bleakley
Journées MAS et Journée en l'honneur de Jacques Neveu, Aug 2010, Talence, France
Documents associated with scientific events inria-00509772v1
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SIRENE: Supervised Inference of Regulatory Networks

Fantine Mordelet , Jean-Philippe Vert
Bioinformatics, 2008, 24 (16), pp.i76-82. ⟨10.1093/bioinformatics/btn273⟩
Journal articles hal-00259119v1
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germline mutations in women with familial breast cancer and a relative with haematological malignancy

Laura La Paglia , Anthony Laugé , Jérémie Weber , Jérôme Champ , Eve Cavaciuti et al.
Breast Cancer Research and Treatment, 2009, 119 (2), pp.443-452. ⟨10.1007/s10549-009-0396-z⟩
Journal articles hal-00535361v1
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Asymptotic Results on Adaptive False Discovery Rate Controlling Procedures Based on Kernel Estimators

Pierre Neuvial
Journal of Machine Learning Research, 2013, 14, pp.1423-1459
Journal articles hal-00460677v2
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Epigenomic Alterations in Breast Carcinoma from Primary Tumor to Locoregional Recurrences

Matahi Moarii , Alice Pinheiro , Brigitte Sigal-Zafrani , Alain Fourquet , Martial Caly et al.
PLoS ONE, 2014, 9 (8), pp.e103986. ⟨10.1371/journal.pone.0103986⟩
Journal articles hal-01064211v1
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Learning smoothing models of copy number profiles using breakpoint annotations

Toby Dylan Hocking , Gudrun Schleiermacher , Isabelle Janoueix-Lerosey , Olivier Delattre , Francis Bach et al.
Preprints, Working Papers, ... hal-00663790v1
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Breast Cancer Risk Associated with Estrogen Exposure and Truncating Mutation Location in BRCA1/2 Carriers

Julie Lecarpentier , Catherine Nogues , Emmanuelle Mouret-Fourme , Bruno Buecher , Marion Gauthier-Villars et al.
Cancer Epidemiology, Biomarkers and Prevention, 2015, 24 (4), pp.698-707. ⟨10.1158/1055-9965.epi-14-0884⟩
Journal articles inserm-01990932v1
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Modelling molecular networks: relationships between different formalisms and levels of details

Sylvain Soliman , Claudine Chaouiya , Grégory Batt , Francois Fages , Élisabeth Remy et al.
[Research Report] RR-7221, INRIA. 2010
Reports inria-00461084v1
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A new protein binding pocket similarity measure based on comparison of 3D atom clouds: application to ligand prediction

Brice Hoffmann , Mikhail Zaslavskiy , Jean-Philippe Vert , Véronique Stoven
Preprints, Working Papers, ... hal-00402627v2
Image document

Feature selection from gene expression data : molecular signatures for breast cancer prognosis and gene regulation network inference

Anne-Claire Haury
Other [cs.OH]. Ecole Nationale Supérieure des Mines de Paris, 2012. English. ⟨NNT : 2012ENMP0067⟩
Theses pastel-00818345v1
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Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay.

Gregoire Pau , Thomas Walter , Beate Neumann , Jean-Karim Hériché , Jan Ellenberg et al.
BMC Bioinformatics, 2013, 14 (1), pp.308. ⟨10.1186/1471-2105-14-308⟩
Journal articles inserm-00880889v1
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Structured priors for supervised learning in computational biology

Laurent Jacob
Life Sciences [q-bio]. École Nationale Supérieure des Mines de Paris, 2009. English. ⟨NNT : 2009ENMP1644⟩
Theses pastel-00005743v1