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Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation
Thomas Bonte
,
Maxence Philbert
,
Emeline Coleno
,
Edouard Bertrand
,
Arthur Imbert
et al.
ECCV 2022 proceedings (Bio-image computing workshop), 2023
Proceedings
hal-03935104v1
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Where Do We Stand in Regularization for Life Science Studies?
Veronica Tozzo
,
Chloé-Agathe Azencott
,
Samuele Fiorini
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Emanuele Fava
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Andrea Trucco
et al.
Journal articles
hal-03367708v1
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A systematic analysis of gene-gene interaction in multiple sclerosis
Lotfi Slim
,
Clément Chatelain
,
Hélène de Foucauld
,
Chloé-Agathe Azencott
Journal articles
hal-03122122v1
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Nonlinear post-selection inference for genome-wide association studies
Lotfi Slim
,
Clément Chatelain
,
Chloé-Agathe Azencott
Conference papers
hal-03122125v1
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NetNorM: Capturing cancer-relevant information in somatic exome mutation data with gene networks for cancer stratification and prognosis
Marine Le Morvan
,
Andrei Zinovyev
,
Jean-Philippe Vert
Journal articles
hal-01679005v1
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Spatial transcriptomics for respiratory research and medicine
Sandra Curras-Alonso
,
Juliette Soulier
,
Thomas Walter
,
Florian Mueller
,
Arturo Londoño-Vallejo
et al.
Journal articles
hal-03376218v1
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Measuring significant changes in chromatin conformation with ACCOST
Kate Cook
,
Borislav Hristov
,
Karine Le roch
,
Jean Philippe Vert
,
William Stafford Noble
et al.
Journal articles
hal-03114387v1
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Molecular Underpinnings and Environmental Drivers of Spontaneous Loss of Heterozygosity in Drosophila Intestinal Stem Cells
Lara Al Zouabi
,
Marine Stefanutti
,
Nick Riddiford
,
Natalia Rubanova
,
Mylène Bohec
et al.
2022
Preprints, Working Papers, ...
hal-03842697v1
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On evaluating how well a biomarker can predict treatment response with survival data
Bassirou Mboup
,
Paul Blanche
,
Aurélien Latouche
Journal articles
hal-03724634v1
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Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis
Michel Adam Wassef
,
Verónica Rodilla
,
Aurélie Teissandier
,
Bruno Zeitouni
,
Nadège Gruel
et al.
Journal articles
hal-02559123v1
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The Weighted Kendall and High-order Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.2314--2322
Conference papers
hal-01717385v1
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Robust Seriation and Applications to Cancer Genomics
Antoine Recanati
,
Nicolas Servant
,
Jean-Philippe Vert
,
Alexandre d'Aspremont
2018
Preprints, Working Papers, ...
hal-01851960v1
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Efficient multi-task chemogenomics for drug specificity prediction
Benoit Playe
,
Chloé-Agathe Azencott
,
Véronique Stoven
Journal articles
hal-01984828v1
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Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass
Maud Borensztein
,
Ikuhiro Okamoto
,
Laurène Syx
,
Guillaume Guilbaud
,
Christel Picard
et al.
Journal articles
hal-03437406v1
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Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
Serena Sanulli
,
Neil Justin
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Aurélie Teissandier
,
Katia Ancelin
,
Manuela Portoso
et al.
Journal articles
hal-01110498v1
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A generic methodological framework for studying single cell motility in high-throughput time-lapse data
Alice Schoenauer Sebag
,
Sandra Plancade
,
Céline Raulet-Tomkiewicz
,
Robert Barouki
,
Jean-Philippe Vert
et al.
Journal articles
hal-01246689v1
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Learning with Minimal Effort: Leveraging in Silico Labeling for Cell and Nucleus Segmentation
Thomas Bonte
,
Maxence Philbert
,
Emeline Coleno
,
Edouard Bertrand
,
Arthur Imbert
et al.
ECCV 2022 Workshops. Lecture Notes in Computer Science, 13804, Springer Nature Switzerland, pp.423-436, 2023, Lecture Notes in Computer Science, 978-3-031-25068-2. ⟨10.1007/978-3-031-25069-9_28⟩
Proceedings
hal-04029154v1
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Prognosis and chemosensitivity of non-V600E BRAF mutations in metastatic colorectal carcinoma (mCRC): An AGEO French multicenter retrospective cohort.
Aline Derosiere
,
Vincent Nicolai
,
David Malka
,
Astrid Pozet
,
Julien Lazartigues
et al.
Journal articles
hal-03606012v1
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Large-scale machine learning for metagenomics sequence classification
Kevin Vervier
,
Pierre Mahé
,
Maud Tourmoud
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
et al.
Bioinformatics, 2016, 32 (7), pp.1023-32
Journal articles
hal-01420829v1
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Telomere length, ATM mutation status and cancer risk in Ataxia-Telangiectasia families
Anne Laure Renault
,
Noura Mebirouk
,
Eve Cavaciuti
,
Dorothée Le Gal
,
J. Lecarpentier
et al.
Journal articles
hal-01658591v1
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Nuclei segmentation in histopathology images using deep neural networks
Peter Naylor
,
Marik Laé
,
Fabien Reyal
,
Thomas Walter
2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017), 2017, Melbourne, Australia
Conference papers
hal-01683969v1
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Dimeric G-quadruplex motifs determine a large fraction of strong replication origins in vertebrates
Jérémy Poulet-Benedetti
,
Caroline Tonnerre-Doncarli
,
Anne-Laure Valton
,
Marc Laurent
,
Marie Gérard
et al.
Journal articles
hal-03932439v1
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Segmentation of Nuclei in Histopathology Images by deep regression of the distance map
Peter Naylor
,
Marick Lae
,
Fabien Reyal
,
Thomas Walter
IEEE Transactions on Medical Imaging, 2018, pp.1-12
Journal articles
hal-01984033v1
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A general and flexible method for signal extraction from single-cell RNA-seq data
Davide Risso
,
Fanny Perraudeau
,
Svetlana Gribkova
,
Sandrine Dudoit
,
Jean-Philippe Vert
et al.
Nature Communications, 2018, 9 (1)
Journal articles
hal-01985432v1
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Endoscopic management of 345 small rectal neuroendocrine tumours: A national study from the French group of endocrine tumours (GTE)
Caroline Fine
,
Guillaume Roquin
,
Eric Terrebonne
,
Thierry Lecomte
,
Romain Coriat
et al.
Journal articles
hal-02549178v1
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Autoimmunity affecting the biliary tract fuels the immunosurveillance of cholangiocarcinoma
Juliette Paillet
,
Céleste Plantureux
,
Sarah Lévesque
,
Julie Le Naour
,
Gautier Stoll
et al.
Journal articles
hal-03378827v1
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The French Early Breast Cancer Cohort (FRESH): A Resource for Breast Cancer Research and Evaluations of Oncology Practices Based on the French National Healthcare System Database (SNDS)
Elise Dumas
,
Lucie Laot
,
Florence Coussy
,
Beatriz Grandal Rejo
,
Eric Daoud
et al.
Journal articles
hal-03901737v1
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Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology
Anna Niarakis
,
Dagmar Waltemath
,
James Glazier
,
Falk Schreiber
,
Sarah Keating
et al.
Journal articles
hal-03690604v1
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Molecular profiling of non-small-cell lung cancer patients with or without brain metastases included in the randomized SAFIR02-LUNG trial and association with intracranial outcome
Alice Mogenet
,
Fabrice Barlesi
,
Benjamin Besse
,
Stefan Michiels
,
Maryam Karimi
et al.
Journal articles
hal-03925563v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
Journal articles
hal-01679012v1
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